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Cait, A, Woods, K, Naidoo K, Gell K, Schmidt A, Jackson R, Grooby A, O'Sullivan D, Gasser O. Tissue-specific contribution of mucosal-associated invariant T cells to allergic airway inflammation. Allergy. 2024.


Burn O.K., MairF, Ferrer-Font L. Combinatorial antibody titrations for high-parameter flow cytometry. Cytometry Part A. 2024.


McKenzie, R. E., Minnell, J. J., Ganley, M.,  Painter, G. F., &  Draper, S. L.  mRNA synthesis and encapsulation in ionizable lipid nanoparticles. Current Protocols. 2023.


McKenzie, R. E. COVID proved the therapeutic potential of RNA technology – making it more available is the next goal. The Conversation. 2023.

Belkina AC, Roe CE, Tang VA, Back JB, Bispo C, Conway A, Chakraborty U, Daniels KT, de la Cruz G, Ferrer-Font L, Filby A, Gravano DM, Gregory MD, Hall C, Kukat C, Mozes A, Ordoñez-Rueda D, Orlowski-Oliver E, Pesce I, Porat Z, Poulton NJ, Reifel KM, Rieger AM, Sheridan RTC, Van Isterdael G, Walker RV. Guidelines for establishing a cytometry laboratory. Cytometry A. 2023


Copedo J.S, Webb, S.C, Ragg N.L.C., Ericson J.A., Venter L., Schmidt A.J., Delorme N.J., Alfaro A.C. Histopathological changes in the greenshell mussel, Perna canaliculus, in response to chronic thermal stress. Journal of Thermal Biology. 2023.

L.N. Zamora, J.A. Jury, L.C. Kozal, M.A. Sewell, N.L.C. Ragg, T.S. Leach, J.M. Wong, A.J. Schmidt. Quantification of lipid droplets in hatchery reared veliger larvae of the green-lipped mussel, Perna canaliculus. Aquaculture. 2023.


Schmidt AJ, Wright GD, Ronchese F, Price KM. Skin Whole-Mount Immunofluorescent Staining Protocol, 3D Visualization, and Spatial Image Analysis. Curr Protoc. 2023.


Laura Ferrer-Font, Geoffrey Kraker, Kathryn E. Hally, Kylie M. Price. Ensuring Full Spectrum Flow Cytometry Data Quality for High-Dimensional Data Analysis. Current Protocols in Cytometry. 2023.

Urban L, Perlas A, Francino O, Martí-Carreras J, Muga BA, Mwangi JW, Boykin Okalebo L, Stanton JL, Black A, Waipara N, Fontsere C, Eccles D, Urel H, Reska T, Morales HE, Palmada-Flores M, Marques-Bonet T, Watsa M, Libke Z, Erkenswick G, van Oosterhout C. Real-time genomics for One Health. Mol Syst Biol. 2023. 


Minnie SA, Waltner OG, Ensbey KS, Olver SD, Collinge AD, Sester DP, Schmidt CR, Legg SR, Takahashi S, Nemychenkov NS, Sekiguchi T, Driessens G, Zhang P, Koyama M, Spencer A, Holmberg LA, Furlan SN, Varelias A, Hill GR. TIGIT inhibition and lenalidomide synergistically promote antimyeloma immune responses after stem cell transplantation in mice. J Clin Invest . 2023.


Laura Ferrer-Font, Alfonso Schmidt, Franca Ronchese, Kylie M. Price. A Guideline for the Appropriate Recognition of Shared Resource Laboratories in Publication. Cytometry Part A. 2022. View Guidelines

Munoz-Erazo, L., Schmidt, A. J., Shinko, D., Eccles, D. A., & Price, K. M. Creation of high-dimensional reduction analysis-compatible histocytometry files from images of densely-packed cells and/or variable stain intensity. Current Protocols. 2022.


Munoz-Erazo, L., Shinko, D., Schmidt, A. J., & Price, K. M. Implementing high dimensional reduction analysis on histocytometric data. Current Protocols. 2022.


Olivia K Burn, Kathryn Farrand, Tara Pritchard, Sarah Draper, Ching-wen Tang, Anna H Mooney, Alfonso J Schmidt, Sung H Yang, Geoffrey M Williams, Margaret A Brimble, Matheswaran Kandasamy, Andrew J Marshall, Kate Clarke, Gavin F Painter, Ian F Hermans & Robert Weinkove Glycolipid-peptide conjugate vaccines elicit CD8+ T-cell responses and prevent breast cancer metastasis. Clinical & Translational Immunology. 2022.

Munoz-Erazo, L., Schmidt, A. J., Shinko, D., & Price, K. M. (2022). How to build an image-processing pipeline for automating multiparameter histocytometry analysis. Current Protocols, 2, e380.

Kef K Prasit, Laura Ferrer-Font, Olivia K Burn, Regan J Anderson, Benjamin J Compton, Alfonso J Schmidt, Johannes U Mayer, Chun-Jen J Chen, Nathaniel Dasyam, David S Ritchie, Dale I Godfrey, Stephen R Mattarollo, P Rod Dundar, Gavin F Painter & Ian F Hermans (2022) Intratumoural administration of an NKT cell agonist with CpG promotes NKT cell infiltration associated with an enhanced antitumour response and abscopal effect, OncoImmunology, 2022.


Hally KE, Ferrer-Font L, Pilkington KR and Larsen PD. OMIP 083: A 21-marker 18-color flow cytometry panel for in-depth phenotyping of human peripheral monocytes (2022). Cytometry A. 2022;1–6. 


Burnard SM, Lea RA, Benton M, Eccles D, Kennedy DW, Lechner-Scott J, Scott RJ. Capturing SNP Association across the NK Receptor and HLA Gene Regions in Multiple Sclerosis by Targeted Penalised Regression Models. Genes. 2022; 13(1):87.  


Diermeir, S., and Price, K. M (2022). NZ needs action now on nanomedicines hub. National Business Review, Guest Opinion, April 2022.  


Munoz-Erazo, L., Schmidt, A., Shinko, D., Eccles, D & Price, K. M (2022). Constructing Advanced Histocytometric Data Files from Complex, Difficult to Segment, Microscopy Images for High-Dimensional Reduction Analysis. Current Protocols, 2022 May;2(5):e441.



Ferrer-Font, L., Small, S. J., Lewer, B., Pilkington, K. R., Johnston, L. K., Park, L. M., Lannigan, J., Jaimes, M. C., & Price, K. M. (2021). Panel optimization for high-dimensional immunophenotyping assays using full-spectrum flow cytometry.  Current Protocols, 1, e222. 7th September 2021.

Kylie Price. Taking RNA technology into NZ’s future (2022). Newsroom, Health & Science OpEd. 

Ngo TTD, Lea RA, Maksemous N, Eccles DA, Smith RA, Dunn PJ, Thao VC, Ha TMT, Bùi CB, 
Haupt LM, Scott R, Griffiths LR (2021). The MinION as a cost-effective technology for diagnostic screening of the SCN1A gene in epilepsy patients. Epilepsy Res. 172:106593 


Pellefigues C, Mehta P, Chappell S, Yumnam B, Old S, Camberis M, Le Gros G (2021). Diverse 
innate stimuli activate basophils through pathways involving Syk and IκB kinases.
Proc Natl Acad Sci U S A. 118(12):e2019524118


Munoz-Erazo L, Schmidt AJ, Price KM (2021). High-Dimensional Image Analysis using Histocytometry. Curr Protoc. 1(6):e184 


Naidoo K, Woods K, Pellefigues C, Cait A, O’Sullivan D, Gell K, Marshall AJ, Anderson RJ, Li Y, Schmidt A, Prasit K, Mayer JU, Gestin A, Hermans IF, Painter G, Jacobsen EA, Gasser O (2021). MR1-dependent immune surveillance of the skin contributes to pathogenesis and is a photobiological target of UV light therapy in a mouse model of atopic dermatitis. Allergy. 76(10):3155-3170 


Ferrer-Font, L., Small, S. J., Lewer, B., Pilkington, K. R., Johnston, L. K., Park, L. M., Lannigan, J., Jaimes, M. C., & Price, K. M. (2021). Panel optimization for high-dimensional immunophenotyping assays using full-spectrum flow cytometry.  Current Protocols, 1, e222. 7th September 2021. doi: 10.1002/cpz1.222 


Mayer JU, Hilligan KL, Chandler JS, Eccles DA, Old SI, Domingues RG, Yang J, Webb GR, Munoz-Erazo L, Hyde EJ, Wakelin KA, Tang SC, Chappell SC, von Daake S, Brombacher F, Mackay CR, Sher A, Tussiwand R, Connor LM, Gallego-Ortega D, Jankovic D, Le Gros G, Hepworth MR, Lamiable O, Ronchese F (2021). Homeostatic IL-13 in healthy skin directs dendritic cell differentiation to promote TH2 and inhibit TH17 cell polarization. Nat Immunol. 


Delorme NJ, Schmidt AJ, Zamora LN, Burritt DJ, Ragg NLC (2021). A new method to localise and quantify oxidative stress in live juvenile mussels. Biol Open


Pellefigues C, Naidoo K, Mehta P, Schmidt AJ, Jagot F, Roussel E, Cait A, Yumnam B, Chappell S, Meijlink K, Camberis M, Jiang JX, Painter G, Filbey K, Uluçkan Ö, Gasser O, Le Gros G (2021). Basophils promote barrier dysfunction and resolution in the atopic skin. J Allergy Clin Immunol 48(3), 799-812.e10


Grasso C, Eccles DA, Boukalova S, Fabre MS, Dawson RH, Neuzil J, Herst PM, Berridge MV (2020). Mitochondrial DNA Affects the Expression of Nuclear Genes Involved in Immune and Stress Responses in a Breast Cancer Model. Front Physiol. 11:543962 


Daniels K, Conway A, Gardner R, Martinez L, Price KM, Schneider S, Sheridan R, Srivastava J, Thornton S (2020). Remote SRL Staff and User Training in a Global Pandemic.Cytometry A.


Hilligan KL, Tang SC, Hyde EJ, Roussel E, Mayer JU, Yang J, Wakelin KA, Schmidt AJ, Connor LM, Sher A, MacDonald AS, Ronchese F (2020). Dermal IRF4+ dendritic cells and monocytes license CD4+ T helper cells to distinct cytokine profiles. Nat Commun. 11(1):5637 


Lamiable O, Mayer JU, Munoz-Erazo L, Ronchese F (2020). Dendritic cells in Th2 immune responses and allergic sensitisation. Immunol Cell Biol. Online ahead of print. 


Filbey KJ, Mehta PH, Meijlink KJ, Pellefigues C, Schmidt AJ, Le Gros G (2020). The Gastrointestinal Helminth Heligmosomoides bakeri Suppresses Inflammation in a Model of Contact Hypersensitivity. Front Immunol. 11:950 


Ferrer-Font L, Mayer JU, Old S, Hermans IF, Irish J, Price KM (2020). High-Dimensional Data Analysis Algorithms Yield Comparable Results for Mass Cytometry and Spectral Flow Cytometry Data. Cytometry A. 97(8):824-831 


Giladi A, Cohen M, Medaglia C, Baran Y, Li B, Zada M, Bost P, Blecher-Gonen R, Salame TM, Mayer JU, David E, Ronchese F, Tanay A, Amit I (2020). Dissecting cellular crosstalk by sequencing physically interacting cells. Nat Biotechnol. 38(5):629-637 


Ferrer-Font L, Pellefigues C, Mayer JU, Small SJ, Jaimes MC, Price KM (2020). Panel Design and Optimization for High-Dimensional Immunophenotyping Assays Using Spectral Flow Cytometry. Curr Protoc Cytom. 92(1):e70 


Shepherd AL, Smith AAT, Wakelin KA, Kuhn S, Yang J, Eccles DA, Ronchese F (2020). A semi-automated technique for adenoma quantification in the ApcMin mouse using FeatureCounter. Sci Rep. 10(1):3064 


Bouchery T, Moyat M, Sotillo J, Silverstein S, Volpe B, Coakley G, Tsourouktsoglou TD, Becker L, Shah K, Kulagin M, Guiet R, Camberis M, Schmidt A, Seitz A, Giacomin P, Le Gros G, Papayannopoulos V, Loukas A, Harris NL (2020). Hookworms Evade Host Immunity by Secreting a Deoxyribonuclease to Degrade Neutrophil Extracellular Traps. Cell Host Microbe. 27(2):277-289.e6 


Ferrer-Font L, Mehta P, Harmos P, Schmidt AJ, Chappell S, Price KM, Hermans IF, Ronchese F, le Gros G, Mayer JU (2020). High-dimensional analysis of intestinal immune cells during helminth infection. Elife. 9:e51678



Czechowska K, Lannigan J, Aghaeepour N, … Price KM, … Tárnok A (2019). Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2019 Conference Workshops. Cytometry A. 95(12):1236-1274 


Schmidt AJ, Mayer JU, Wallace PK, Ronchese F, Price KM (2019). Simultaneous Polychromatic Immunofluorescent Staining of Tissue Sections and Consecutive Imaging of up to Seven Parameters by Standard Confocal Microscopy. Curr Protoc Cytom. 91(1):e64 


Pellefigues C, Mehta P, Prout MS, Naidoo K, Yumnam B, Chandler J, Chappell S, Filbey K, Camberis M, Le Gros G (2019) The Basoph8 Mice Enable an Unbiased Detection and a Conditional Depletion of Basophils. Front Immunol. 10:2143 


Boykin LM, Sseruwagi P, Alicai T, Ateka E, Mohammed IU, Stanton JL, Kayuki C, Mark D, Fute T, Erasto J, Bachwenkizi H, Muga B, Mumo N, Mwangi J, Abidrabo P, Okao-Okuja G, Omuut G, Akol J, Apio HB, Osingada F, Kehoe MA, Eccles D, Savill A, Lamb S, Kinene T, Rawle CB, Muralidhar A, Mayall K, Tairo F, Ndunguru J (2019). Tree Lab: Portable genomics for Early Detection of Plant Viruses and Pests in Sub-Saharan Africa. Genes (Basel). 10(9):632 



Ochiai, S., Jagot, F., Kyle, R., Hyde, E., White, R.F., Prout, M., Schmidt, A.J., Yamane, H., Lamiable, O., Le Gros, G., Ronchese, F. ‘Thymic stromal lymphopoietin drives the development of IL-13 + Th2 cells.’ PNAS


Bouchery, T., Filbey, K., Shepherd, A., Chandler, J., Patel, D., Schmidt, A.J., Camberis, M., Peignier, A., Smith, A.A.T., Johnston, K., Painter, G., Pearson, M., Giacomin, P., Le Gros, G. ‘Novel blood feeding detoxification pathway in Nippostrongylus brasiliensis L3 reveals a potential checkpoint for arresting Hookworm development.’ PLOS Pathogens. 


Poyntz, HC, Jones A, Jauregui R, Young W, Gestin A, Mooney A, Lamiable O, Altermann E, Schmidt A, Gasser O, Weyrich L, Jolly CJ, Linterman MA, Le Gros G, Hawkins ED, Forbes-Blom E (2018) 

Genetic regulation of antibody responsiveness to immunization in substrains or BALB/c mice. Immunol & Cell Biol 97(1):39-53 


Pellefigues C., Tang, S., Schmidt, A., White, R.F., Lamiable, O., Connor, L.M., Ruedi, C., Dobrucki, J., Le Gros, G., Ronchese, F. ‘Toll-Like Receptor 4, but Not Neutrophil Extraceullular Traps, Promote IFN Type 1 Expression to Enhance Th2 Responses to Nippostrongylus brasiliensisFrontiers in Immunology: 8 :1575.



Kerry L Hilligan, Lisa M Connor, Alfonso J Schmidt and Franca Ronchese.  (2016)  Activation-Induced TIM-4 Expression Identifies Differential Responsiveness of Intestinal CD103+ CD11b+ Dendritic Cells to a Mucosal Adjuvant.  PLOS One.  Jul 5;11(7):e0158775. doi: 10.1371/journal.pone.0158775. 


Kylie M. Price, Katharine A. Muirhead and Paul K. Wallace.  (2016).  Proliferation by many other names: Monitoring cell cycle progression and cell division by flow Cytometry.  

Cytometry Part A, March. 10.1002/cyto.a.22815.


Schmidt A, Bouchery T, Le Gros G and Price KM.  (2016).  Large Particle Sorting to Isolate Live Parasitic Nematode Eggs.  Curr. Protoc. Cytom.  Apr 1;76:11.21.1-11.21.15. doi: 10.1002/0471142956.cy1121s76 



Naomi J Daniels, Evelyn Hyde, Sayani Ghosh, Kyounga Seo, Kylie M Price, Katsuaki Hoshino, Tsuneyasu Kaisho, Takaharu Okada and Franca Ronchese.  Antigen-specific cytotoxic T lymphocytes target airway CD103+ and CD11b+ dendritic cells to suppress allergic inflammation. Mucosal Immunol. Doi: 10.1038/mi.2015.55. 


Kylie M Price and Mike Berridge. (2015) Laser light illuminates medical research. New Zealand Science Review. Vol. 72 (2): 49-53. 

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